mushroom is just the apple on the fungal tree

An example of an analogy used in public scienec discourse:

KF: "Mycelium is the main body of the fungus. It's the bit that grows, it's the bit that eats stuff, it's basically this network of threadlike filaments that branch and connect and mesh together to form this web,"

DOB: "So what we think of as mushrooms, they're just a fruit?"

KF: "that's just the apple on the tree."

Prof. Katie Field (Professor of Plant-Soil Processes at the University of Sheffield) was talking to Dara ó Briain on an episode ('Furnishing with Fungi') of 'Curious Cases'.

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'Threadlike' could be seen as a simile: the filaments are like threads. 'Eat' could be seen as a metaphor, as the process for obtaining nutrition (secreting chemicals to break down material outside the fungus, and then absorbing the pre-digested materials) is somewhat different from how we normally understand eating. The 'web' can also seen to be metaphorical, as resembling, in some ways, a spider's web.

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specialist sciences are branches of a unitary tree

An example of an analogy used by a scientist

"If a supreme intelligence knew all the mysterious explanations linking all phenomena in the universe, there would be one single science instead of many different sciences. The frontiers that appear to separate field of learning, the formal scaffolding of our classification scheme, the artificial division of things to please our intellects – which can only view reality in stages and by facets – would disappear completely in the eyes of such an individual. Total science would appear as a giant tree, whose branches represent the individual sciences and whose trunk represents the principle or principles upon which they are founded. The specialist works like a caterpillar perched on a leaf, cherishing the illusion that his little world flutters isolated in space. Endowed with a philosophical sense, the generalist sees – however imperfectly – the stem that is common to many branches. But only the genius alluded to above would enjoy the good fortune and power to see the entire tree, science, unitary despite its many specialisations."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

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data analysis is painful like childbirth

An example of simile in the writing of a scientist:

"The indescribable pleasure – which pales the rest of life's joys – is abundant compensation for the investigator who endures the painful and persevering analytical work that precedes the appearance of the new truth, like the pain of childbirth."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

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science and philosophy serve as the dynamometers for human spiritual energy

An example of metaphor in a scientist's writing

"Because science and philosophy represent the highest branches of mental activity, and serve as the dynamometers for human spiritual energy, it is clear why civilised nations exhibit noble pride in their philosophers, mathematicians, physicists, naturalists, and inventors…"

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

The dynamometer used as a metaphor here. But scientists do not recognise a form of energy known as spiritual energy, so this seems to also be a metaphorical term,

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Many examples of science metaphors are listed in 'Creative comparisons: Making science familiar through language. An illustrative catalogue of figurative comparisons and analogies for science concepts'. Free Download.

great discoveries grow like seeds cast by chance on fertile soil

An example of metaphor and simile in scientific writing:

"The brilliant series of discoveries in electricity that followed Volta's development of the voltaic pile at the beginning of the last [sic] century, the Pleiades of histological work inspired by Schwann's discovery of cell multiplication, and the profound repercussions that the not so distant finding of roentgen rays have produced in all areas of physics (the observation of radioactivity, and the discovery of radium and polonium and of the phenomenon of emanation) are good examples of that creative and, in a sense, automatic virtue possessed by all great discoveries, which seem to grow and multiple like seeds cast by chance on fertile soil."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

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Many examples of science similes are listed in 'Creative Comparisons: Making Science Familiar through Language. An illustrative catalogue of figurative comparisons and analogies for science concepts'. Free Download.

Read about metaphor in science

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Many examples of science metaphors are listed in 'Creative comparisons: Making science familiar through language. An illustrative catalogue of figurative comparisons and analogies for science concepts'. Free Download.

science is like an army that needs generals as well as soldiers

An example of an analogy used in scientific writing:

"Science, like an army, needs generals as well as soldiers; plans are conceived by the former, but the latter actually conquer."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

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humble fungi are on a mission

An example of teleology in scientific writing,

"…if these humble fungi – whose mission is to return to the general circulation of matter those substances incorporated by the higher plants and animals – were to disappear, humans could not inhabit the planet."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

To refer to the fungi's mission implies a deliberate purpose:

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Examples of teleological statements are included in a document listing a wide range of examples of science analogies, similes, metaphors and the like, drawn from diverse sources, which can be downloaded using this link: 'Creative Comparisons: Making Science Familiar through Language. An illustrative catalogue of figurative comparisons and analogies for science concepts.'

Calling fungi humble is metaphorical, as an entity can only be humble if it could make alternative choices (so as to be arrogant and pretentious perhaps). This can be considered an anthropomorphic metaphor as it suggests fungi have human-like properties.

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sometimes scientific discoveries occur as if by spontaneous generation

A simile (to a historical scientific notion) used in a scientist's writing:

"…we must recognise that there are times when, on the heels of a chance discovery or the development of an important new technique, magnificent scientific discoveries occur one after another as if by spontaneous generation."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

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Spontaneous generation was long a respectable explanation for the original of 'lower' organisms like flies and worms which were not thought to need parents.

experimental science is mundane where philosophy is celestial

An example of an analogy in a scientist's writing:

"…we [sic, I] believe that by abandoning the ethereal realm of philosophical principles and abstract methods we can descend to the solid ground of experimental science, as well as to the sphere of ethical considerations involved in the process of inquiry."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

At one time it was believed that the heavens were made of an element (aether or ether) quite different from the elements found on earth (then usually considered to be earth, water, air and fire). The heavens were considered perfect, and the earth debased (by human sin) – but Cajal, writing centuries after this model was abandoned, is using the illusion intending more a contrast between what is practical/useful and 'down to earth' rather than not being 'grounded'.

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Read about the ideas of the ether

methodologists are like people studying anatomy and physiology to speak more eloquently

An example of an analogy in a scientist's writings,

"Those writing on logical methods impress me in the same way as would a speaker attempting to improve his eloquence by learning about brain speech centres, about voice mechanics, and about the distribution of nerves to the larynx – as if knowing these anatomical and physiological details would create organisation where none exists, or refine what we already have."

Santiago Ramón y Cajal (1999). Advice for a Young Investigator. The MIT Press. (Translation of 4th Spanish Edition, 1916)

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matter chases its own tail

An example of a metaphor used to explain a scientific idea:

"…new material appears in space to compensate for the background material that is constantly being condensed into galaxies. … I find myself forced to assume that the nature of the Universe requires continuous creation – the perpetual bringing into being of new background material.

…Matter that already exists causes new matter to appear. Matter chases its own tail.

I do not agree that continuous creation is an additional assumption. It is certainly a new hypothesis, but it only replaces a hypothesis that lies concealed in the older theories, which assume…that the whole of the matter in the Universe was created in one big bang at a particular time in the remote past. On scientific grounds this big bang assumption is much the less palatable of the two. For it is an irrational process that cannot be described in scientific terms. Continuous creation, on the other hand, can be represented by mathematical equations whose consequences can be worked out and compared with observation. On philosophical grounds, too, I cannot see any good reason for preferring the big bang idea. Indeed, it seems to me in the philosophical sense to be a distinctly unsatisfactory notion, since it puts the basic notion out of sight where it can never be challenged by a direct appeal to observation

The average rate of appearance of matter amounts to no more than the creation of one atom in the course of a year in a volume equal to that of a skyscraper

It is a simple consequence of all this that the total amount of energy that can be observed at any one time must be equal to the amount observed at any other time. This means that energy is conserved. So continuous creation does not lead to non-conservation of energy as one or two critics have suggested. The reverse is the case, for without continuous creation the total energy observed must decrease with time."

Fred Hoyle (1960) The Nature of the Universe (Revised ed.)

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The reference to a skyscraper offers an everyday comparison to give a sense of scale of an abstract process

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A document listing a wide range of examples of science analogies, similes, metaphors and other comparisons, drawn from diverse sources, can be downloaded using this link: 'Creative Comparisons: Making Science Familiar through Language. An illustrative catalogue of figurative comparisons and analogies for science concepts.'

Hoyle is using the metaphor of matter chasing its own tail to describe his theory of continuous creation, which leads to a steady state universe: that is, the gross appearance of the universe remains constant over time: in contrast to the idea that the universe was formed in a singularity (the 'big bang') and is continually expanding such that groups of galaxies will eventually move apart, and eventually be too far apart to be detected from each other. On this scenario, all the stars eventually' 'burn out' and dim and cool, and eventually all the energy in the universe is so evenly spread that it is in effect a 'dead' dark (and very cold) place.

Hoyle's alternative to the big bang did not persuade most astronomers, and today the Big Bang theory (ironically known by the term Hoyle used to denigrate it) is widely accepted as the likely origin of the universe.

Note that Hoyle's version of the law of conservation of energy does not refer to all the energy in the universe being conserved (the usual account – which of course can never be 'proved!), but rather that the energy in the observable universe is conserved (while the total energy increases with the creation of new material). In effect, it is conservation of mean energy density, not total energy.

Nowadays, Hoyle's theory is largely regarded as a historical alternative conception.

light from a distant galaxy gets lost on its way to us

An example of figurative language used in popular science writing,

"…the struggle of the light against the expansion of space does show itself…in the reddening of the light.

…there must be intermediate cases where a galaxy is at such a distance that, so to speak, the light it emits neither gains ground nor loses it. In this case the path between us and the galaxy stretches at just such a rate as exactly compensates for the velocity of the light. The light gets lost on its way. It is a case, as the Red Queen remarked to Alice, of 'taking all the running you can do to keep in the same place'."

Fred Hoyle (1960) The Nature of the Universe (Revised ed.)

In this situation the light continues to be transmitted through space, but just never reaches us – so getting lost is a form of metaphor.

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The Red Queen talking to Alice is a literary reference: Hoyle assumes readers will be familiar with the Lewis Caroll stories of Alice.